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The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 15

  2. introduction-to-image-analysis introduction-to-image-analysis Public

    Forked from RMS-DAIM/introduction-to-image-analysis

    Jupyter Notebook 13 6

  3. lyra lyra Public archive

    Agentic primative repository

    Python 11 3

  4. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 10 1

  5. Segment-Flow Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    Python 9 4

  6. aiod_napari aiod_napari Public

    Python 8 2

Repositories

Showing 10 of 229 repositories
  • CLEM_image_analysis_workshop Public
    FrancisCrickInstitute/CLEM_image_analysis_workshop's past year of commit activity
    1 CC-BY-SA-4.0 0 0 0 Updated Nov 11, 2026
  • spatial-bio-training Public Forked from FrancisCrickInstitute/CellSurvey
    FrancisCrickInstitute/spatial-bio-training's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Nov 11, 2026
  • aiod_napari Public
    FrancisCrickInstitute/aiod_napari's past year of commit activity
    Python 8 MIT 2 3 4 Updated Nov 11, 2026
  • CellSurvey Public

    GPU-accelerated Python pipeline for image-based spatial omics, built on Sopa and SpatialData

    FrancisCrickInstitute/CellSurvey's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Nov 11, 2026
  • pMANIC Public

    Desktop application for GC-MS isotopologue analysis with natural isotope abundance correction. Python, PySide6.

    FrancisCrickInstitute/pMANIC's past year of commit activity
    Python 1 GPL-3.0 1 20 2 Updated Nov 10, 2026
  • flag-qc Public
    FrancisCrickInstitute/flag-qc's past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Nov 10, 2026
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow's past year of commit activity
    Python 9 MIT 4 2 7 Updated Nov 10, 2026
  • aiod_utils Public
    FrancisCrickInstitute/aiod_utils's past year of commit activity
    Python 1 MIT 1 0 8 Updated Nov 10, 2026
  • JamiesonSwitch Public
    FrancisCrickInstitute/JamiesonSwitch's past year of commit activity
    Python 0 0 0 0 Updated Nov 10, 2026
  • TME_machine_learning Public

    Machine learning methods to analyse or classify tumours based on microenvironment features

    FrancisCrickInstitute/TME_machine_learning's past year of commit activity
    1 0 0 4 Updated Nov 9, 2026
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