Issues

• WF - Add Trackastra for tracking (Wiegert lab)

  effort: mediumimpact: mediumpriority: P5roadmap
  NL-BioImaging/biomero-workflows#13 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• TDCC-LSH FAIR workflow integration

  effort: mediumimpact: mediumpriority: P4roadmap
  NL-BioImaging/biomero-workflows#12 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• WF - Add Cellphie workflow for low-quality images

  effort: mediumimpact: mediumpriority: P3roadmap
  NL-BioImaging/biomero-workflows#11 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• Workflow registry (where to find BIAFLOWS/Bilayers workflows)

  blockedeffort: mediumimpact: mediumpriority: P3roadmap
  NL-BioImaging/biomero-workflows#10 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• WF - measurement: handle 8-channel images

  effort: mediumimpact: mediumpriority: P3roadmap
  NL-BioImaging/biomero-workflows#9 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• WF - Add a BiaPy models workflow

  effort: lowimpact: mediumpriority: P3roadmap
  NL-BioImaging/biomero-workflows#8 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• [BUG] 'Melanoom fenotypes T Cell infiltration.tif' failed in Cellpose

  effort: lowimpact: mediumpriority: P3roadmap
  NL-BioImaging/biomero-workflows#7 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• WF2 - tilescan crosstalk correction & analysis

  effort: highimpact: highpriority: P3roadmap
  NL-BioImaging/biomero-workflows#6 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• Streaming Zarr module for Bilayers workflows + blog post

  priority: P2roadmap
  NL-BioImaging/biomero-workflows#5 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• WF1 - aggregates & DNA screen analysis

  blockedeffort: highimpact: highpriority: P2roadmap
  NL-BioImaging/biomero-workflows#4 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• FAIR: Add image I/O and running examples to released workflows

  priority: P2roadmap
  NL-BioImaging/biomero-workflows#3 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• [WF] Aggregates CellProfiler workflow as Bilayers?

  priority: P2roadmap
  NL-BioImaging/biomero-workflows#2 · Filter by author pmkrawczyk opened on Nov 10, 2026