Pioneer Labs

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1. ngs_library_prep ngs_library_prep Public

   Code for running Illumina Library Prep on Hamilton STARlet with PyLabRobot, originally built for in-house use at Pioneer Labs (Emeryville, CA USA)

   Jupyter Notebook 12 1

2. long-read-qc long-read-qc Public

   Nextflow pipeline for long read QC of barcoded genomic libraries

   HTML 1

3. BioBloom_preprint BioBloom_preprint Public

   Code accompanying the preprint report of BioBloom

   Jupyter Notebook 1

4. short-read-pipeline short-read-pipeline Public

   Extract and analyze barcodes from short reads

   Python

5. long-read-library-featurization long-read-library-featurization Public

   Nextflow pipeline for quality control and featurization of high-depth long read library sequencing data

   Python

6. library-selection-integration library-selection-integration Public

   Pipeline to integrate long read library data with short read selection data

   Python