Issues

• AnnotatePeaksFromGTF() / make_reference() fail with newer Bioconductor versions

  VCCRI/Sierra#74 · Filter by author charlottecasus1-jpg opened on Sep 7, 2026

• Error with DetectUTRLengthShift: GetAssayData() slot argument is defunct in SeuratObject 5.0.0+

  VCCRI/Sierra#73 · Filter by author Shun-Yasui opened on Jan 7, 2026

• Question on counting overlapping peaks

  VCCRI/Sierra#72 · Filter by author HenriettaHolze opened on Aug 2, 2024
  1

• Changes in gene 3'UTR length

  VCCRI/Sierra#70 · Filter by author TianYu-828 opened on Mar 20, 2024
  1

• Interpretation of log2 fold changes in the result

  VCCRI/Sierra#69 · Filter by author Kyung-TaeLee opened on Jan 16, 2024
  1

• PlotRelativeExpressionUMAP - can an additional function be added to bring out cells that are buried in the UMAP plot?

  VCCRI/Sierra#68 · Filter by author ckong18 opened on Dec 15, 2023

• Error in PlotRelativeExpression functions

  VCCRI/Sierra#66 · Filter by author hkarakurt8742 opened on Sep 16, 2023
  1

• Getting "Error in (function (x) : attempt to apply non-function"

  VCCRI/Sierra#63 · Filter by author alanlamsiu opened on Jul 5, 2023
  3

• issues with generating splice junction file

  VCCRI/Sierra#60 · Filter by author ckong1806 opened on Mar 3, 2023
  7

• is it possible to generate a plot that shows global 3'UTR length change?

  VCCRI/Sierra#59 · Filter by author ntsopoul opened on Feb 4, 2023

• Sierra dataframe has 0 length

  VCCRI/Sierra#57 · Filter by author top334 opened on Dec 26, 2022
  1

• DUTest function Error

  VCCRI/Sierra#56 · Filter by author hkarakurt8742 opened on Nov 14, 2022
  1

• FindPeaks Error--'x' values larger than vector length 'sum(width)'

  VCCRI/Sierra#55 · Filter by author Jun2BCR opened on Oct 17, 2022
  2

• Cellranger mkref function parameters for Sierra

  VCCRI/Sierra#54 · Filter by author hkarakurt8742 opened on Oct 16, 2022
  1

• Generate GitHub Releases

  VCCRI/Sierra#53 · Filter by author mfansler opened on Aug 18, 2022
  2

• Does the Sierra package have a detailed protocol, I would like to find.

  VCCRI/Sierra#51 · Filter by author liuyu988 opened on Jul 9, 2022
  1

• CoveragePlot error with 'zoom_3UTR=TRUE '

  VCCRI/Sierra#49 · Filter by author BettinaNa opened on Feb 9, 2022
  1

• Error when running CountPeaks

  VCCRI/Sierra#48 · Filter by author idupanloup opened on Nov 29, 2021
  8

• peak discrepancy

  VCCRI/Sierra#47 · Filter by author cag1343 opened on Nov 28, 2021
  1

• umap coordinates for NewPeakSeurat

  VCCRI/Sierra#43 · Filter by author leeanapeters opened on Sep 30, 2021
  3

• Using STARSolo SJ.out.tab?

  VCCRI/Sierra#36 · Filter by author cnk113 opened on Aug 6, 2021
  4

• Error in x$.self$finalize()

  VCCRI/Sierra#34 · Filter by author AidenSb opened on Jul 21, 2021
  6

• PeakSeuratFromTransfer error

  VCCRI/Sierra#33 · Filter by author Nbalb opened on Jun 28, 2021
  1

• User-defined pseudo-bulk samples?

  VCCRI/Sierra#30 · Filter by author borshago opened on Apr 22, 2021
  1