Issues

• Clarify subsampling scheme

  WASAP
  cbg-ethz/sr2silo#458 · Filter by author chaoran-chen opened on Aug 29, 2026
  2

  

• Finish integration to V-Pipe

  WASAP
  cbg-ethz/sr2silo#456 · Filter by author taepper opened on May 5, 2026
  

• Split out amino acid alignment generation

  WASAP
  cbg-ethz/sr2silo#452 · Filter by author taepper opened on Mar 24, 2026
  

• Sequences stuck in review

  cbg-ethz/sr2silo#448 · Filter by author taepper opened on Mar 9, 2026

• Document the submission flow to Loculus, as it's implemented here.

  cbg-ethz/sr2silo#442 · Filter by author fhennig opened on Feb 17, 2026
  2

• Document that submitting to Loculus is possible in the README

  cbg-ethz/sr2silo#441 · Filter by author fhennig opened on Feb 17, 2026

• Migrate from Bioconda to container-based distribution for faster release cycles

  enhancementinfrastructure
  cbg-ethz/sr2silo#408 · Filter by author gordonkoehn opened on Dec 15, 2025

• Auto-update SILO database config from LAPIS API

  enhancement
  cbg-ethz/sr2silo#379 · Filter by author gordonkoehn opened on Oct 27, 2025