Issues

• Updated needed in NAMESPACE or/and DESCRIPTION file (org.Hs.eg.db, org.Mm.eg.db)

  dputhier/scigenex#188 · Filter by author SouvilleL opened on Feb 4, 2026

• plot_ggheatmap should throw an error if names used in "split.by" are not in the object.

  dputhier/scigenex#185 · Filter by author dputhier opened on Nov 3, 2025

• Fix doc so that help file is available for generic not methods.

  dputhier/scigenex#183 · Filter by author dputhier opened on Oct 14, 2025

• Add an example for mouse in top_by_go()

  dputhier/scigenex#180 · Filter by author dputhier opened on Sep 11, 2025

• scRNA-seq vignette - not using scigenex features for improved RunPCA()

  dputhier/scigenex#179 · Filter by author martin-cusack opened on Aug 19, 2025
  1

• update the doc

  dputhier/scigenex#177 · Filter by author dputhier opened on Jul 23, 2025

• Add a section with gene info (one tab per user selected go term).

  dputhier/scigenex#174 · Filter by author dputhier opened on Jul 23, 2025

• Add gene of interest un gm_report()

  dputhier/scigenex#173 · Filter by author dputhier opened on Jul 22, 2025

• Annotate FT in cnetplot()

  dputhier/scigenex#171 · Filter by author dputhier opened on Jul 22, 2025

• static heamap: x/y spots vs gene -> to be changed

  dputhier/scigenex#164 · Filter by author dputhier opened on Jun 3, 2025

• enrich_go() should support additional organisms.

  dputhier/scigenex#163 · Filter by author dputhier opened on Apr 29, 2025

• Todo: implement a cell specifity score in cluster_stats()

  dputhier/scigenex#162 · Filter by author dputhier opened on Apr 26, 2025

• reorder_clust() should be fixed for new_order arg.

  dputhier/scigenex#160 · Filter by author dputhier opened on Apr 24, 2025

• res@dbf_output$center: center should be in the main structure and should support indexing

  dputhier/scigenex#157 · Filter by author dputhier opened on Apr 23, 2025
  1

• gg_heatmap fail when top_genes contains a unique gene

  dputhier/scigenex#152 · Filter by author dputhier opened on Mar 17, 2025

• top_genes() : take into account an object with no cluster...

  dputhier/scigenex#148 · Filter by author dputhier opened on Feb 23, 2025

• Fix error when one cluster is empty in plot_cmp_genesets()

  dputhier/scigenex#144 · Filter by author dputhier opened on May 22, 2024

• select_genes() could accept anndata

  enhancement
  dputhier/scigenex#127 · Filter by author dputhier opened on Oct 16, 2023

• Function for reconstructing network

  enhancement
  dputhier/scigenex#118 · Filter by author dputhier opened on May 30, 2023