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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 741 399

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    C++ 449 109

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 354 90

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 261 151

  5. FMM3D FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

    Fortran 163 56

  6. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 160 96

Repositories

Showing 10 of 247 repositories
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    flatironinstitute/finufft's past year of commit activity
    C++ 449 109 42 (3 issues need help) 16 Updated Oct 22, 2026
  • nemos-documentation Public

    Host nemos docs build

    flatironinstitute/nemos-documentation's past year of commit activity
    0 MIT 0 0 0 Updated Oct 22, 2026
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos's past year of commit activity
    Python 146 MIT 27 121 (1 issue needs help) 10 Updated Oct 22, 2026
  • jaxmg Public

    JAXMg: A multi-GPU linear solver in JAX

    flatironinstitute/jaxmg's past year of commit activity
    C++ 111 Apache-2.0 6 0 3 Updated Oct 22, 2026
  • vintch-v1-model Public

    Implementation of V1 model from Vintch et al., 2015

    flatironinstitute/vintch-v1-model's past year of commit activity
    Python 0 MIT 0 1 1 Updated Oct 22, 2026
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift's past year of commit activity
    TypeScript 65 Apache-2.0 20 54 5 Updated Oct 22, 2026
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground's past year of commit activity
    TypeScript 61 Apache-2.0 3 11 (2 issues need help) 2 Updated Oct 21, 2026
  • poet Public

    Perfectly Over Engineered Templates

    flatironinstitute/poet's past year of commit activity
    C++ 8 MIT 0 0 0 Updated Oct 21, 2026
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft's past year of commit activity
    C++ 143 Apache-2.0 12 9 4 Updated Oct 21, 2026
  • numbl Public

    Numerical computing environment that aims to be compatible with Matlab

    flatironinstitute/numbl's past year of commit activity
    TypeScript 14 Apache-2.0 3 12 4 Updated Oct 21, 2026
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